Knowledge Beacons: Web services for data harvesting of distributed biomedical knowledge

نویسندگان

چکیده

The continually expanding distributed global compendium of biomedical knowledge is diffuse, heterogeneous and huge, posing a serious challenge for researchers in harvesting: accessing, compiling, integrating interpreting data, information knowledge. In order to accelerate research towards effective medical treatments optimizing health, it critical that efficient automated tools identifying key concepts their experimentally discovered interrelationships are developed. As an activity within the feasibility phase project called “Translator” ( https://ncats.nih.gov/translator ) funded by National Center Advancing Translational Sciences (NCATS) develop science management platform, we designed Representational State Transfer (REST) web services Application Programming Interface (API) specification, which call Knowledge Beacon. Beacons provide standardized basic API discovery concepts, relationships associated supporting evidence from online repositories This specification also enforces annotation statements NCATS endorsed Biolink Model data model semantic encoding standards https://biolink.github.io/biolink-model/ ). Implementation this on top diverse sources potentially enables uniform integration behind client software will facilitate access Availability open source currently available at https://github.com/NCATS-Tangerine/translator-knowledge-beacon .

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ژورنال

عنوان ژورنال: PLOS ONE

سال: 2021

ISSN: ['1932-6203']

DOI: https://doi.org/10.1371/journal.pone.0231916